Sources/Licenses

Source type	Source name	License	True neg.	Score
edge (gene-gene)	STRING	CC BY	No	Yes
edge (gene-go)	GO	CC BY	No	Yes
edge (gene-disease)	DisGeNet	CC BY-NC-CA	No	Yes
edge (gene-phenotype)	HPO	Custom: HPO	No	No
edge (gene-anatomy)	Bgee	CC 0	Yes	Yes
edge (gene-drug)	STITCH	CC BY	No	Yes
edge (gene-pathway)	CTD	Custom: CTD	No	No
edge (disease-phenotype)	HPO	Custom: HPO	Yes	No
edge (disease-drug)	DrugCentral	CC BY-SA	Yes	No
edge (drug-phenotype)	SIDER	CC BY-NC-CA	No	No
ontology (genes)	GO	CC BY
ontology (diseases)	DO	CC 0
ontology (phenotype)	HPO	Custom: HPO
ontology (anatomy)	UBERON	CC BY
mapping (UMLS-DO)	DisGeNet	CC BY-NC-CA
mapping (STRING-NCBI)	STRING	CC BY
mapping (ENSEMBL/UNIPROT-NCBI)	UniProt	CC BY
id (genes)	NCBI	Public Domain
id (go)	GO	CC BY
id (anatomy)	UBERON	CC BY
id (disease)	DO	CC 0
id (drug)	PubChem	Public Domain
id (phenotype)	HPO	Custom: HPO
id (pathway)	REACTOME	CC BY
id (pathway)	KEGG	Custom: KEGG

(True neg.: whether the data contains true negative relations; Score: whether the data contains evidence quality scores for filtering relations)

The OpenBioLink benchmark files integrate data or identifiers from these sources. The provenance of data items is captured in the benchmark files, and licensing terms of source databases apply to these data items. Please mind these licensing terms when utilizing or redistributing the benchmark files or derivatives thereof.

All original data in the benchmark files created by the OpenBioLink project (not covered by the licenses of external data sources) are released as CC 0.

We offer the benchmark files as-is and make no representations or warranties of any kind concerning the benchmark files, express, implied, statutory or otherwise, including without limitation warranties of title, merchantability, fitness for a particular purpose, non infringement, or the absence of latent or other defects, accuracy, or the present or absence of errors, whether or not discoverable, all to the greatest extent permissible under applicable law.